- Xiangying Jiang, PhD, 2021 (Now a Research Scientist at Amazon)
- Moumita Bhattacharya, PhD, 2019 (Now a Senior Research Scientist at Netflix Research)
- Layan Nahlawi, PhD, 2017 (Now a Senior Scientist, Neuroscience Group, Genomic Reserch Center at AbbVie, Chicago. Joint supervision with Prof. Parvin Mousavi)
- Quazi Abidur Rahman, PhD, 2016 (Now an Assistant Professor at Lakehead University, ON, Canada)
- Ramanuja Simha, PhD, 2016
- Kaidi Ma, MSc, 2018
- Debarati Roychowdhury, MSc, 2016
- Mohammed Alali, MSc, 2015
- Sheng Zhu, MSc, 2014
- Sanjeev Patra, MSc, 2013
- Ramya Narayanaswamy, MSc, 2013
- Andrew Wong, MSc, 2013 (Now at The Office of Personalized Genomics & Innovative Medicine, Mount Sinai Hospital, Toronto)
Thesis: Prediction of Protein Function using Text Features Extracted from the Biomedical Literature - Rob Denroche, MSc, 2010 (Now at Ontario Institute for Cancer Research)
Thesis: Automatic Identication of Protein Characterization Articles in support of Database Curation - Yin Lam, MSc, 2010 (Now at IBM)
Thesis: Comparing Naive Bayes Classifiers with Support Vector Machines for Predicting Protein Subcellular Location Using Text Features - Phil Hyoun Lee, PhD, November 2009 (Now at Harvard Medical School)
Thesis: Prioritizing SNPs for Disease-Gene Association Studies: Algorithms and Systems - Sara Salehi, MSc, 2009 (Now a PhD student at Queen's University)
Thesis: Automated Biomedical Text Fragmentation in support of Biomedical Sentence Fragment Classification - Jess Shen, MSc, November 2007 (Now at Mount Sinai Hospital)
Thesis: Using Cluster Analysis, Cluster Validation and Consensus Clustering to Identify Subtypes of Pervasive Developmental Disorders - Scott Brady, MSc, May 2007 (Now an Emergency Medicine Physician at Grand River Hospital, London, ON, Canada)
Thesis: Text-Based Prediction of Protein Subcellular Location - Fengxia Pan, MSc, November 2006 (Now at Microsoft)
Thesis: Multi-Dimensional Fragment Classification in Biomedical Text - Hogyeong Jeong
Principal Investigator
|
Dr. Hagit Shatkay Professor |
Current Graduate Students and Post-Docs (University of Delaware)
Pengyuan Li PhD student |
Kasra Nezamabadi PhD student |
Christina Peters Post-Doc |
Gongbo Zhang PhD student |
Graduate Alumni
Undergraduate Alumni
- Melody Lugo (Database of Multi-Localized Proteins, 2016)
- Dean Arnold (Database of Multi-Localized Proteins, 2016)
- Tongming Li (Database of Multi-Localized Proteins, 2015)
- Corey Shannon (User Interface for MDLoc: Protein Multi-Location Prediction, 2015)
- Joshua Simmons (User Interface for MDLoc: Protein Multi-Location Prediction, 2015)
- Aleksandra Bragozewska (Genomics of Autism, graduated 2008)
- Ana Maria Crisan (Genomics of Autism, graduated 2008)
- Andrew Wong (Functional SNPs: The F-SNP Database, graduated 2008)
- Paul Bernhardt (NSERC summer student, New Features for BLIMP: a Biomedical LIterature Mining Publications Web Service. Summer 2007)
- Gursev Sidhu (Image-based Text Categorization, graduated 2007)
- Aran Donohue (Abbrev, graduated 2007)
- Scott Brady (Subcellular Localization, graduated 2005. MSc, 2007)
- Christopher Chan (Biomedical Text Mining, graduated 2005. Now an MD student at McGill)
- Kelly Corkum (Biomedical Text Mining, graduated 2005)
- Anirudh Garg (Biomedical Text Mining, NSERC student 2005)
- Denny Kim (Subcellular Localization, graduated 2004)
- Oliver Ng (Relational Database for storing MEDLINE, graduated 2005)
- Matthew Rocheford (Subcellular Localization, graduated 2005)
- John San Miguel (Subcellular Localization, graduated 2005)
- Limin Zhang (BLIMP, graduated 2005)