Publication List of Chuming Chen

By Year | By Topic | By Type

COPYRIGHT NOTICE: Papers are provided to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holders.

Computer Science and Engineering

2023

2022

2021

2020

2019

2018

2017

2016

  • UniProt: the universal protein knowledgebase

    The UniProt Consortium
    Nucl. Acids Res. doi: 10.1093/nar/gkw1099 First published online: November 29, 2016

  • Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

    Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K, Ruttenberg A, Shamovsky V, Smith B, Wang Q, Zhang J, El-Sayed A, Wu CH
    Nucleic Acids Res 2016 Nov 28. pii: gkw1075. [Epub ahead of print]

  • Computational Clustering for Viral Reference Proteomes

    Chuming Chen, Hongzhan Huang, Raja Mazumder, Darren A. Natale, Peter B. McGarvey, Jian Zhang, Shawn W. Polson, Yuqi Wang, Cathy H. Wu and UniProt Consortium
    Bioinformatics 2016. doi: 10.1093/bioinformatics/btw110

  • 2015

    2014

    2013

    2012

    • Aberrant iron homeostasis, oxidative fiber enrichment, and activation of ketogenesis i n muscle tissue of ISCU Myopathy patients

      Crooks, Daniel R.; Natarajan, Thanemozhi G.; Chuming Chen; Hongzhan Huang; Ghosh, Manik C.; Wing-Hang Tong; Haller, Ronald G.; Wu, Cathy; Ro Rouault, Tracey A.
      BMC Proceedings, 6(Suppl 3):P58 doi:10.1186/1753-6561-6-S3-P58 (2012)

    • Community annotation and bioinformatics workforce development in concert - Little skate genome annotation workshops and jamborees

      Qinghua Wang, Cecilia N. Arighi, Benjamin L. King, Shawn W. Polson, James Vincent, Chuming Chen, Hongzhan Huang, Brewster F. Kingham, Sha llee T. Page, Marc Farnum Rendino, W. Kelley Thomas, Daniel W. Udwary, Cathy H. Wu and the North East Bioinformatics Collaborative Curation Team
      Database, doi: 10.1093/database/bar064 (2012)

    • Representative Proteomes and Genomes: A standardized, stable and unbiased set of proteomes/genomes ideal for use in genome annotation, metagenom ic efforts and analyzing taxonomic nomenclature biases.

      Mona Motwani, Chuming Chen, Hongzhan Huang, Darren Natale, Jamal Theodore, Cathy H. Wu, Raja Mazumder International Biocuration Conference 2012,April 2-4, 2012.

    • Community annotation and bioinformatics workforce development in concert - Little skate genome annotation workshops and jamborees

      Qinghua Wang, Cecilia N. Arighi, Benjamin L. King, Shawn W. Polson, James Vincent, Chuming Chen, Hongzhan Huang, Brewster F. Kingham, Sha llee T. Page, Marc Farnum Rendino, W. Kelley Thomas, Daniel W. Udwary, Cathy H. Wu and the North East Bioinformatics Collaborative Curation Team
      International Biocuration Conference 2012,April 2-4, 2012.

    2011

    2010

    2009

    2008

    2007

    2006

    • Data integration gets 'Sloppy'

      Jonas S. Almeida, Chuming Chen, Robert Gorlitsky, Romesh Stanislaus, Marta Aires-de-Sousa, Pedro Eleuterio, Joao. Carrico, Antonio Maretzek, Andreas Bohn, Allen Chang, Fan Zhang, Rahul Mitra, Gordon B. Mills, Xiaoshu Wang, Helena F. Deus
      Nature Biotechnology, (9):1070-1071. (2006)

    2005

    2004

    • A Web Interface for Nessus Network Security Scanner

      Chuming Chen and Manton M. Matthews
      In Proceedings of the International Conference on Internet Computing, Hamid R. Arabnia and Olaf Droegehorn (editors), Las Vegas, Nevada, USA, p. 383-389. (2004)

    • A Dual Authentication Protocol for Wireless LANs

      Chuming Chen, Xinliang Zheng, Chin-Tser Huang, and Manton M. Matthews
      Technical Report (USC CSE TR-2004-006). (2004)

    2003

    • A Web Interface for Nessus Network Security Scanner

      Chuming Chen
      M.S. Thesis, Department of Computer Science and Engineering, University of South Carolina. (2003)


    Earth Science

    2002

    • The Crustal Shortening and Its Timing of Kuqa Rejuvenation Foreland Deformation Belt and its Implication on the Coupling Mechanism of the Basin Depression and Mountains Building in North Flank of Tarim Basin and south foothill of Tianshan Mountains, China

      Lu Huafu, Jia Dong, Jia Chengzao, Wang Shenli, Yin Donghao, Liu Zhihong, Chen Chuming, J. Suppe, A. Hubert Ferarri
      In Proceedings of International symposium on Chinese petroleum exploration in 21st centrury, Hanzhou. (2002)

    2001

    • Features of the thrust wedge of deformation belt in Kuqa rejuvenation foreland basin

      Lu Huafu, Jia Chenzhao, Jia Dong, Chen Chuming, Liu Zhihong, Wang Guoqiang and Wang Shengli.
      Geological Journal of China Universities, Vol. 7, No. 3, p. 257 - 271. (in Chinese with English abstract). (2001)

    2000

    • Tectonic Evolutin of Kuqa Rejuventated Foreland Basin

      Liu Zhihong, Lu Huafu, Li Xijian, Jia Chengzao, Lei Ganglin, Chen Chuming, Wang Guoqiang, Fan Xiangtao
      Chinese Journal of Geology, Vol. 35, No. 4, p. 482-492. (in Chinese with English abstract). (2000)

    • Structural characteristics and genesis of thrust belt of Kuqa rejuvenation foreland basin

      Lu Huafu, Chen Chuming, Liu Zhihong, Jia Dong, Wang Guoqiang and Jia Chengzhao
      Acta Petrolei Sinica, Vol. 21, No. 3, p. 18 -24. (in Chinese with English abstract). (2000)

    • Geometry, Kinematics and Origin of Kuche Rejuvenated Foreland Thrust Belt on the Northern Flank of Tarim Basin

      Chuming Chen
      Ph.D. Dissertation, Department of Earth Sciences, Nanjing University, P. R. China. (in Chinese with English abstract). (2000)

    1999

    1998

    1997

    • Arithmetic method in polar stereograhoc projection

      Qian Hui, Dong Huogeng and Chen Chuming
      Geological Journal of China Universities, Vol. 3, No. 3, p. 328-337. (in Chinese with English abstract). (1997)

    • Evidence for growth fault-bend folds in the Tarim basin and its implication for fault-slip rates in the Mesozoic and Cenozoic

      Huafu Lu, Dong Jia, Chuming Chen, Dongsheng Cai, Guoqiang Wang, LinZhi Guo and Yangshen Shi
      In Proceedings of 30th International Geological Congress, Vol. 14, p. 253-262. (1997)

    • A new model deduced from Kalpin transpression tectonics and its implications to the Tarim basin

      Huafu Lu, Dong Jia, Chuming Chen, Dongsheng Cai, Shimin Wu, Guoqiang Wang, Linzhi Guo, Yangshen Shi, David Gardiner Howell
      In Proceedings of 30th International Geological Congress, Vol. 14, p. 196-202. (1997)

    1996

    • Origin and evolution of tectonics in central Asia

      Shi Yangshen, Lu Huafu, Jia Dong, Chen Chuming, Cai Dongsheng and Wu Shimin
      Geological Journal of Universities, Vol. 2, No. 2, p. 134-145. (in Chinese with English abstract). (1996)

    • 40Ar/39Ar dating of the ophilite melange in Southern Tianshan the the Mylonite in the Southern rim of center Tianshan and their tectonic significance

      Cai Dongsheng, Lu Huafu, Jia Dong, Wu Shimin and Chen Chuming
      Scientia Geologica Sinica, Vol. 34, No. 4, 384-390. (in Chinese with English abstract). (1996)

    1995

    • Paleozoic plate-tectonic evolution of the Tarim and western Tianshn regions, western China

      Shi Yangshen, Lu Huafu, Jia Dong, Cai Dongsheng, Wu Shimin, Chen Chuming, Howell G. David, Valin C. Zenon
      International Geology Review, Vol. 36, No. 11, p. 1058-1066. (1995).

    1994

    • Rejuvenation of the Kuqa foreland basin, Northern flank of the Tarim basin, Northwestern China

      Lu Huafu, David G. Howell, Jia Dong, Cai Dongsheng, Wu Shiming, Chen Chuming, Shi Yangshen, Zenon C. Valin
      International Geology Review, Vol. 36, No. 10, p. 1151-1158. (1994).

    • Kalpin transpression tectonics, northwestern Tarim basin, western China

      Lu Huafu, Howell G. David, Jia Dong, Cai Dongsheng, Wu Shimin, Chen Chuming, Shi Yangshen, Valin C. Zenon, Guo LinZhi
      International Geology Review, Vol. 36, No. 10, p. 975-981. (1994).

    • Structural and Petroleum Geology of Kepin, Kuche and Yinmaili on the Northern Flank of Tarim Basin

      Chuming Chen
      B.S. Thesis, Department of Earth Sciences, Nanjing University, P. R. China. (in Chinese). (1994)


    \