Joint Penn-UDel Seminar on DNA Computing
Engineering DNA Computer Architectures:
Bringing Mesoscopic (Molecular) Computing into the Mainstream
John-Thones Amenyo, Ph.D.
Bio-Silicon System
(Graphic by John Furno (c).)
This viewpoint is complementary to the very basic research directions of
characterizing DNA molecular processes most useful for digital computing and
identifying suitable algorithms and computational problems.
This talk will focus on the author's original design of *general-purpose*
DNA computer architectures, based on the concepts of computing flow and
flow manipulations.
Furthermore, the talk will also expand on the current attempts to design
and build a "Virtual Laboratory" for DNA Computing.
Some of the powerful ideas involved in this attempt include, modeling complex
dynamic process networks as examples of DNA computing algorithms;
computing flow interactions; and insights from the engineering focus
into understanding co-operative inter-gene interactions (communications
and signaling) in biological DNA.
One goal of the Virtual Laboratory concept is to make modern ideas of
molecular (DNA-based) computing more readily accessible to a wider community
of engineers and scientists, who are likely to be more knowledgeable about
the extant dominant paradigm of semiconductor-based, electronic computing.
Thursday, January 16, 1997,
at 4pm in Room 526 of the Johnson Pavilion, 36th Street and Hamilton
Walk, at the center of the University of Pennsylvania campus.
Register in the lobby as a guest of Dr. Harvey Rubin.
An important part of research into Molecular Computing is creating computer
architectures for DNA-based computing as well as embedding such
architectures in complex computational networks, whose other subsystems
could include electronic computers, opto-electronic and even possibly
all-optical computers. Such a hybrid architecture could conceivably be
useful in tackling "grand challenge" problems in science and engineering,
including scientific data visualization and simulations.