CISC 841 Bioinformatics (Spring 2006)

( under construction)

2/7 Lec 1: Overview of the course (note)

2/9 Lec 2: A primer to molecular biology (slides)

2/14 Lec 3: Homology detection: sequence similarity based approaches

2/16 Lec 4: Pairwise alignment

2/21 Lec 5: Gap penalty

2/23 Lec 6: Refinements for pairwise alignments

2/28 Lec 7: Use similarity search for annotations

3/2 Lec 8: Profiles

3/7 Lec 9: HMMs: (Tutorial by Rabiner, Tutorial by Petrushin Part I & Part II)

3/9 Lec 10: HMMs:

3/14 Lec 11: HMMs:

3/16 Lec 12: Kernel methods (Lecture notes)

3/21 Lec 13: Kernel methods

3/23 Midterm

3/28 (Spring break)

3/30 (Spring break)

4/4 Class canceled

4/6 Lec 14: Biological Networks (Slides)

Interesting and related papers: