=================== BACILLUS_CEREUS =================== Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: BACILLUS_CLARKII Length: 552 Best Alignment with Constant Cost for Long Insertions Similarity Score : 3451 Match Percentage : 81% Number of Matches : 466 Number of Mismatches : 52 Total Length of Gaps : 53 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||||| |||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCT |||||||||||||| |-|||--|| || || || --------------- 51 ATGCAAGTCGAGCGCA GGA AACAGGCTGATCCCTTCGGGGTGATGCC 100 . : . : . : . : . : 86 TATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATA | || | | |||||||||||||||||||||||||||| |||||||| 98 TGTGGAATGAGCGGCGGACGGGTGAGTAACACGTGGGCAACCTGCCTTAC 150 . : . : . : . : . : 136 AGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGAT AACA ||||||||||||||||||||||||||||||||||||||||------||-- 148 AGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATGAYCAGAA 200 . : . : . : . : . : 180 TTTTGAACCGCATGGTTCGAAATTG AAAGGCGGCTTCGG ----||||||||||||||-----||-----||||-----|| ||------ 196 GAACCGCATGGTTC TGCTGTAAAAG TTGGGACTTGT 250 . : . : . : . : . : 219 CTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTA --|| |||| ||||| |||||| ||||||||||||||||||||||| 232 TCCTAACACTGTAAGATGGGCCCGCGGCGCATTAGCTAGTTGGTGAGGTA 300 . : . : . : . : . : 267 ACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCC ||||||||||||||| |||||||||||||||||||||||||||||||||| 282 ACGGCTCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCC 350 . : . : . : . : . : 317 ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGG ||||||| |||||||||||| ||||||||||||||||||||||||||||| 332 ACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTAGGG 400 . : . : . : . : . : 367 AATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGAT |||| |||||||||| |||||| ||||||| |||||||||||||| ||| 382 AATCATCCGCAATGGGCGAAAGCCTGACGGTGCAACGCCGCGTGAACGAT 450 . : . : . : . : . : 417 GAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAG ||||| ||||| | ||||| |||||||| ||||||||||| |||| 432 GAAGGTCTTCGGATTGTAAAGTTCTGTTGTCAGGGAAGAACACGTGCCGT 500 . : . : . : . : . : 467 TTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAAC | ||| | | |||||||||||||||||| ||||||||||| |||||||| 482 TCGAACAGGGCGGCACCTTGACGGTACCTGACCAGAAAGCCCCGGCTAAC 550 . : . : 517 TACGTGCCAGCAGCCGCGGTA ||||||||||||||||||||| 532 TACGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: BACILLUS_PASTEURII Length: 536 Best Alignment with Constant Cost for Long Insertions Similarity Score : 3593 Match Percentage : 86% Number of Matches : 479 Number of Mismatches : 38 Total Length of Gaps : 39 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||||| |||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGA ATGGATTAAGAG CTTGCT CTTATGAAG |||||||||||||||--| |||---||| -|||| |-----||| ----| 51 ATGCAAGTCGAGCGACCAAGGA AGAAACTTGTTTCTTCCTTT G 100 . : . : . : . : . : 93 TTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGG ||||||||||| |||||||||||||||||| ||||||||| || || 94 TTAGCGGCGGATGGGTGAGTAACACGTGGGCAACCTGCCCTGCAGTTGGG 150 . : . : . : . : . : 143 GATAACTCCGGGAAACCGGGGCTAATACCGGATAA CATTT TGAACC |||||||||||||||||||||||||||||| ||||-|| ||---|----| 144 GATAACTCCGGGAAACCGGGGCTAATACCGAATAATCAGTTCCTT C 200 . : . : . : . : . : 189 GCATG GTTCGAAAT TGAAAGGCGGCT TCGGCTGTCACTTATGGATG |||||--|---||| |-|||||| |||||-|--||||||||| ||||| 190 GCATGAAG GAACTCTGAAAGACGGCTAT GCTGTCACTGCAGGATG 250 . : . : . : . : . : 235 GACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAAC | |||||| ||||||||||||||||||||||||||||| |||||||| || 235 GGCCCGCGGCGCATTAGCTAGTTGGTGAGGTAACGGCTTACCAAGGCGAC 300 . : . : . : . : . : 285 GATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 285 GATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACAC 350 . : . : . : . : . : 335 GGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACG |||||||||||||||||||||||||||||||||||||||| ||||||||| 335 GGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACG 400 . : . : . : . : . : 385 AAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTA ||||||||| |||||||||||||||||| || ||||| |||||| ||||| 385 AAAGTCTGATGGAGCAACGCCGCGTGAGCGAAGAAGGTTTTCGGATCGTA 450 . : . : . : . : . : 435 AAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTG GCA || ||||||||| |||||||||||||| |-||--|| |||-|||---| | 435 AAGCTCTGTTGTGAGGGAAGAACAAGTAC AG GAGTAA CTGCCTGTA 500 . : . : . : . : . : 482 CCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCC |||||||||||||| | |||||||||||||||||||||||||||||||| 481 CCTTGACGGTACCTCATTAGAAAGCCACGGCTAACTACGTGCCAGCAGCC 550 . 532 GCGGTA |||||| 531 GCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: BACILLUS_SUBTILIS_SUBTILIS Length: 535 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4340 Match Percentage : 91% Number of Matches : 497 Number of Mismatches : 34 Total Length of Gaps : 10 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||||| |||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAA TGGATTAAGAGCTTGCTCTTATGAAGTTAG |||||||||||||| |----|||-----|||||||||| -||| ||||| 51 ATGCAAGTCGAGCGGACAGATGG GAGCTTGCTCCC TGATGTTAG 100 . : . : . : . : . : 97 CGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATA ||||||||||||||||||||||||||||||||||| ||||||||||||| 95 CGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCTGTAAGACTGGGATA 150 . : . : . : . : . : 147 ACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTT ||||||||||||||||||||||||||||| |||||||||||||||| 145 ACTCCGGGAAACCGGGGCTAATACCGGATGGTTGTTTGAACCGCATGGTT 200 . : . : . : . : . : 197 CGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGC | || | ||||| |||||||||| |||||| |||||||||||| ||| 195 CAAACATAAAAGGTGGCTTCGGCTACCACTTACAGATGGACCCGCGGCGC 250 . : . : . : . : . : 247 ATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCG |||||||||||||||||||||||||||||||||||||||||||||||||| 245 ATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCG 300 . : . : . : . : . : 297 ACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCC |||||||||||||||||||||||||||||||||||||||||||||||||| 295 ACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCC 350 . : . : . : . : . : 347 TACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGG |||||||||||||||||||||||||||||||||||||||||||||||||| 345 TACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGG 400 . : . : . : . : . : 397 AGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGT ||||||||||||||||||||||||| |||||| ||||||| ||||||||| 395 AGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGT 450 . : . : . : . : . : 447 TAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTA ||||||||||||||| | | ||||| | || |||||||||||||||| 445 TAGGGAAGAACAAGTACCGTTCGAATAGGGCGGTACCTTGACGGTACCTA 500 . : . : . : . : 497 ACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA ||||||||||||||||||||||||||||||||||||||||| 495 ACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: BACILLUS_THURINGIENSIS Length: 537 Best Alignment with Constant Cost for Long Insertions Similarity Score : 5245 Match Percentage : 99% Number of Matches : 532 Number of Mismatches : 5 Total Length of Gaps : 0 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGC |||||||||||||||||||||| |||||||||||| | |||||||||||| 51 ATGCAAGTCGAGCGAATGGATTGAGAGCTTGCTCTCAAGAAGTTAGCGGC 100 . : . : . : . : . : 101 GGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTC |||||||||||||||||||||||||||||||||||||||||||||||||| 101 GGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTC 150 . : . : . : . : . : 151 CGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAA ||||||||||||||||||||||||||| ||||||||| |||||||||||| 151 CGGGAAACCGGGGCTAATACCGGATAAYATTTTGAACTGCATGGTTCGAA 200 . : . : . : . : . : 201 ATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTA |||||||||||||||||||||||||||||||||||||||||||||||||| 201 ATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTA 250 . : . : . : . : . : 251 GCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCT |||||||||||||||||||||||||||||||||||||||||||||||||| 251 GCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCT 300 . : . : . : . : . : 301 GAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG |||||||||||||||||||||||||||||||||||||||||||||||||| 301 GAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 350 . : . : . : . : . : 351 GGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCA |||||||||||||||||||||||||||||||||||||||||||||||||| 351 GGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCA 400 . : . : . : . : . : 401 ACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGG |||||||||||||||||||||||||||||||||||||||||||||||||| 401 ACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGG 450 . : . : . : . : . : 451 GAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCA |||||||||||||||||||||||||||||||||||||||||||||||||| 451 GAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCA 500 . : . : . : . 501 GAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA ||||||||||||||||||||||||||||||||||||| 501 GAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 2017 Match Percentage : 71% Number of Matches : 406 Number of Mismatches : 88 Total Length of Gaps : 71 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||| |||||||||||||| |||||| || 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAG AGCTTGCTCTTATGAAGTTAGCG |||||||||||||| |||----|||--||||||||| |--| | | |||| 51 ATGCAAGTCGAGCGGATG AAGGGAGCTTGCTCCT GGATTCAGCG 100 . : . : . : . : . : 99 GCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAAC |||||||||||||||| | | ||-|| ||||| || |||||||| 95 GCGGACGGGTGAGTAATGCCTAGG AATCTGCCTGGTAGTGGGGGATAAC 150 . : . : . : . : . : 149 TCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCG | |||||| || |||||||||| |||-| | |||-------||---| 144 GTCCGGAAACGGGCGCTAATACCGCATA CGTCCTGA GG G 200 . : . : . : . : . : 199 AAATTGAAAGGCGG CTTCGG CTGTCACTTATGGATGGA |----||||| ||----||||||--------|| |||------|||| 183 A GAAAGTGGGGGATCTTCGGACCTCACGCTATCA GATGAG 250 . : . : . : . : . : 237 CCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGA || |||| ||||||||||||||| ||||| ||| |||||||| |||| 223 CCTAGGTCGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGA 300 . : . : . : . : . : 287 TGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGG | |||| | | |||||||| ||||| | |||||||| |||||||||||| 273 TCCGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACACGG 350 . : . : . : . : . : 337 CCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAA ||||||||||||||||||||||||| |||||| || |||||| |||| 323 TCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAA 400 . : . : . : . : . : 387 AGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAA || |||| ||| | |||||||| |||| ||||| ||||| | ||||| 373 AGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGTAAA 450 . : . : . : . : . : 437 ACTCT GTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCAC | ||----|||| |||-------||| ||------| |||| | || 423 GCACTTTAAGTTGGGAGG AAGGGC AGTAAGTTAATAC 500 . : . : . : . : . : 483 CTTG ACGGTACCTAACCAGAA AGCCACGGCTAACTACGTG ||||--------||| |||| |--|||||--||| ||||||||| |||| 460 CTTGCTGTTTTGACGTTACCAA CAGAATAAGCACCGGCTAACTTCGTG 550 . : . 523 CCAGCAGCCGCGGTA ||||||||||||||| 508 CCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: PSEUDOMONAS_FLAVESCENS Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 1934 Match Percentage : 71% Number of Matches : 404 Number of Mismatches : 87 Total Length of Gaps : 77 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||| |||||||||||||| |||||| || 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAG AGCTTGCT CTTATGAAGTTA |||||||||||||| ||-----||---||||||||--|| ||----| | 51 ATGCAAGTCGAGCGGTTG AGGGGAGCTTGCTCCCTGAT TCA 100 . : . : . : . : . : 96 GCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGAT ||||||||||||||||||| | | ||-|| ||||| || || |||| 92 GCGGCGGACGGGTGAGTAATGCCTAGG AATCTGCCTATTAGTGGGGGAC 150 . : . : . : . : . : 146 AAC TCCGGGAAACCGGG GCTAATACCGGATAACATTTTGAACCG |||---||---||||---||---|||||||||| |||------------- 141 AACGTTTC GAAA GGAACGCTAATACCGCATA 200 . : . : . : . : . : 190 CATGGTTCGAAATTGAAAGGCGG CTTCGG CTGTCACTTATGGAT | | | || |--||||| ||----||||||--|| | || || ||| 172 CGTCCTACGGGA GAAAGCAGGGGACCTTCGGGCCTTGCGCTAATAGAT 250 . : . : . : . : . : 234 GGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAA | || |||| ||||||||||||||| ||||| ||||||||||||| | 220 GAGCCTAGGTCGGATTAGCTAGTTGGTGGGGTAAAGGCTCACCAAGGCGA 300 . : . : . : . : . : 284 CGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACA |||| |||| | | |||||||| ||||| | |||||||| ||||||||| 270 CGATCCGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACA 350 . : . : . : . : . : 334 CGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGAC ||| ||||||||||||||||||||||||| |||||| || |||||| | 320 CGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGC 400 . : . : . : . : . : 384 GAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGT ||||| |||| ||| | |||||||| |||| ||||| ||||| | || 370 GAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGT 450 . : . : . : . : . : 434 AAAACTCT GTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGG ||| | ||----|||| |||-------||| ||------| ||||| 420 AAAGCACTTTAAGTTGGGAGG AAGGGC AGTAAGCGAA 500 . : . : . : . : . : 480 CACCTTG ACGGTACCTAACCAGAA AGCCACGGCTAACTAC ||||||--------||| |||| |--|||||--||| ||||||||| 457 TACCTTGCTGTTTTGACGTTACCGA CAGAATAAGCACCGGCTAACTCT 550 . : . 520 GTGCCAGCAGCCGCGGTA |||||||||||||||||| 505 GTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: PSEUDOMONAS_FLUORESCENS Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 1907 Match Percentage : 71% Number of Matches : 404 Number of Mismatches : 90 Total Length of Gaps : 71 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||| |||||||||||||| |||||| || 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAGA GCTTGCT CTTATGAAGTTAGCG ||||||||||||||---| | |||-|||||||-|| ||| ---|||| 51 ATGCAAGTCGAGCG GTAGAGAGAAGCTTGCTTCTCTTGAG AGCG 100 . : . : . : . : . : 99 GCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAAC |||||||||||||||| | | ||-|| ||||| || |||||||| 95 GCGGACGGGTGAGTAAAGCCTAGG AATCTGCCTGGTAGTGGGGGATAAC 150 . : . : . : . : . : 149 TCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTT --||--|||||| | |||||||||| |||-------------| | | 144 GTTC GGAAACGGACGCTAATACCGCATA CGTCCTA 200 . : . : . : . : . : 197 CGAAATTGAAAGGCGG CTTCGG CTGTCACTTATGGATG || |--||||| ||----||||||--------|| |||------|||| 179 CGGGA GAAAGCAGGGGACCTTCGGGCCTTGCGCTATCA GATG 250 . : . : . : . : . : 235 GACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAAC || |||| ||||||||||||||||||||| ||||||||||||| || 221 AGCCTAGGTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGAC 300 . : . : . : . : . : 285 GATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACAC ||| |||| | | |||||||| ||||| | |||||||| |||||||||| 271 GATCCGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACAC 350 . : . : . : . : . : 335 GGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACG || ||||||||||||||||||||||||| |||||| || |||||| || 321 GGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCG 400 . : . : . : . : . : 385 AAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTA |||| |||| ||| | |||||||| |||| ||||| ||||| | ||| 371 AAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGTA 450 . : . : . : . : . : 435 AAACTCT GTTGTTAGGGAAG AACAAGTGCTAGTTGAATAA || | ||----|||| |||-|||------|||-----|||-----||| 421 AAGCACTTTAAGTTGGGAGG AAGGGCATTAAC CTA ATAC 500 . : . : . : . : . : 475 GCTGGCACCTTGACGGTACCTAACCAGAA AGCCACGGCTAACTACGTG | | | |||||| |||| |--|||||--||| ||||||||| ||| 460 GTTAGTGTTTTGACGTTACCGA CAGAATAAGCACCGGCTAACTCTGTG 550 . : . 523 CCAGCAGCCGCGGTA ||||||||||||||| 508 CCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: PSEUDOMONAS_FLUORESCENS_A Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 1968 Match Percentage : 72% Number of Matches : 405 Number of Mismatches : 95 Total Length of Gaps : 59 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||| |||||||||||||| |||||| || 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAGA GCTTGCT CTTATGAAGTTAGCG ||||||||||||||---| | |||-|||||||-|| ||| ---|||| 51 ATGCAAGTCGAGCG GTAGAGAGAAGCTTGCTTCTCTTGAG AGCG 100 . : . : . : . : . : 99 GCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAAC |||||||||||||||| | | ||-|| ||||| || |||||||| 95 GCGGACGGGTGAGTAATGCCTAGG AATCTGCCTGGTAGTGGGGGATAAC 150 . : . : . : . : . : 149 TCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTT --||--|||||| | |||||||||| |||-------------| | | 144 GTTC GGAAACGGACGCTAATACCGCATA CGTCCTA 200 . : . : . : . : . : 197 CGAAATTGAAAGGCGG CTTCGG CTGTCACTTATGGATG || |--||||| ||----||||||--------|| |||------|||| 179 CGGGA GAAAGCAGGGGACCTTCGGGCCTTGCGCTATCA GATG 250 . : . : . : . : . : 235 GACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAAC || |||| ||||||||||||||||||||| ||||||||||||| || 221 AGCCTAGGTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGAC 300 . : . : . : . : . : 285 GATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACAC ||| |||| | | |||||||| ||||| | |||||||| |||||||||| 271 GATCCGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACAC 350 . : . : . : . : . : 335 GGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACG || ||||||||||||||||||||||||| |||||| || |||||| || 321 GGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCG 400 . : . : . : . : . : 385 AAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTA |||| |||| ||| | |||||||| |||| ||||| ||||| | ||| 371 AAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGTA 450 . : . : . : . : . : 435 AAACTCT GTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGC || | ||----|||| ||| | |-----|| ||| | |||| ||| 421 AAGCACTTTAAGTTGGGAGGAAGG GTTGTAGATTAATACTCTGCA 500 . : . : . : . : . : 481 ACCTTGACGGTACCTAACCAGAA AGCCACGGCTAACTACGTGCCAGCA | |||||| |||| |--|||||--||| ||||||||| ||||||||| 466 ATTTTGACGTTACCGA CAGAATAAGCACCGGCTAACTCTGTGCCAGCA 550 . 529 GCCGCGGTA ||||||||| 514 GCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: BACILLUS_CEREUS Length: 537 Lower Sequence: PSEUDOMONAS_FLUORESCENS_B Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 1932 Match Percentage : 70% Number of Matches : 402 Number of Mismatches : 87 Total Length of Gaps : 81 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATAC ||||||||||||||||||||||| |||||||||||||| |||||| || 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGAATGGATTAAGA GCTTGCT CTTATGAAGTTAGCG ||||||||||||||---| | |||-|||||||-|| ||| ---|||| 51 ATGCAAGTCGAGCG GTAGAGAGAAGCTTGCTTCTCTTGAG AGCG 100 . : . : . : . : . : 99 GCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAAC |||||||||||||||| | | ||-|| ||||| || |||||||| 95 GCGGACGGGTGAGTAATGCCTAGG AATCTGCCTGGTAGTGGGGGATAAC 150 . : . : . : . : . : 149 TCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTT --||--|||||| | |||||||||| |||-------------| | | 144 GTTC GGAAACGGACGCTAATACCGCATA CGTCCTA 200 . : . : . : . : . : 197 CGAAATTGAAAGGCGG CTTCGG CTGTCACTTATGGATG || |--||||| ||----||||||--------|| |||------|||| 179 CGGGA GAAAGCAGGGGACCTTCGGGCCTTGCGCTATCA GATG 250 . : . : . : . : . : 235 GACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAAC || |||| ||||||||||||||||||||| ||||||||||||| || 221 AGCCTAGGTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGAC 300 . : . : . : . : . : 285 GATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACAC ||| |||| | | |||||||| ||||| | |||||||| |||||||||| 271 GATCCGTAACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGACAC 350 . : . : . : . : . : 335 GGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACG || ||||||||||||||||||||||||| |||||| || |||||| || 321 GGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCG 400 . : . : . : . : . : 385 AAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTA |||| |||| ||| | |||||||| |||| ||||| ||||| | ||| 371 AAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGTCTTCGGATTGTA 450 . : . : . : . : . : 435 AAACTCT GTTGTTAGGGAAGA ACAAGTGCTAGTTG || | ||----|||| |||-||||-----------| | ||| | |||- 421 AAGCACTTTAAGTTGGGAGG AAGAGCAGTTACCTAATACGTGATTGTT 500 . : . : . : . : . : 470 AATAAGCTGGCACCTTGACGGTACCTAACCAGAA AGCCACGGCTAACT --------------|||||| |||| |--|||||--||| ||||||||| 469 TTGACGTTACCGA CAGAATAAGCACCGGCTAACT 550 . : . : 518 ACGTGCCAGCAGCCGCGGTA |||||||||||||||||| 503 CTGTGCCAGCAGCCGCGGTA =========================== PSEUDOMONAS_AERUGINOSA =========================== Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLAVESCENS Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4470 Match Percentage : 94% Number of Matches : 492 Number of Mismatches : 30 Total Length of Gaps : 0 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTCAGCGGCGGAC ||||||||||||||| ||| ||||||||||||| ||||||||||||||| 51 ATGCAAGTCGAGCGGTTGAGGGGAGCTTGCTCCCTGATTCAGCGGCGGAC 100 . : . : . : . : . : 101 GGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGTCCGGA ||||||||||||||||||||||||||| |||||||||| ||||| || 101 GGGTGAGTAATGCCTAGGAATCTGCCTATTAGTGGGGGACAACGTTTCGA 150 . : . : . : . : . : 151 AACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGATCTTC || | ||||||||||||||||||||| ||||||||| ||||| |||| 151 AAGGAACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGACCTTC 200 . : . : . : . : . : 201 GGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGGGG || ||| ||||| ||||||||||||||||||||||||||||||||||| 201 GGGCCTTGCGCTAATAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGGGG 250 . : . : . : . : . : 251 TAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG ||||||| ||||||||||||||||||||||||||||||||||||||||| 251 TAAAGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG 300 . : . : . : . : . : 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG |||||||||||||||||||||||||||||||||||||||||||||||||| 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG 350 . : . : . : . : . : 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG |||||||||||||||||||||||||||||||||||||||||||||||||| 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG 400 . : . : . : . : . : 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTA |||||||||||||||||||||||||||||||||||||||||||||||||| 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTA 450 . : . : . : . : . : 451 AGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCGGCTAA || ||||||||||||||||||||||||| |||||||||||||||||||| 451 AGCGAATACCTTGCTGTTTTGACGTTACCGACAGAATAAGCACCGGCTAA 500 . : . : 501 CTTCGTGCCAGCAGCCGCGGTA || |||||||||||||||||| 501 CTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4330 Match Percentage : 92% Number of Matches : 487 Number of Mismatches : 30 Total Length of Gaps : 10 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTC AGCGG ||||||||||||||| || | |||||||| ||-----|-----||||| 51 ATGCAAGTCGAGCGGTAGAGAGAAGCTTGCTTCT CTTGAGAGCGG 100 . : . : . : . : . : 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT ||||||||||||||| |||||||||||||||||||||||||||||||||| 96 CGGACGGGTGAGTAAAGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT 150 . : . : . : . : . : 146 CCGGAAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGA ||||||||| ||||||||||||||||||||| ||||||||| ||||| 146 TCGGAAACGGACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGA 200 . : . : . : . : . : 196 TCTTCGGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG |||||| ||| ||||||||||||||||||||||||||||||||||||| 196 CCTTCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG 250 . : . : . : . : . : 246 TGGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG || ||||| ||| |||||||||||||||||||||||||||||||||||| 246 TGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG 300 . : . : . : . : . : 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC |||||||||||||||||||||||||||||||||||||||||||||||||| 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC 350 . : . : . : . : . : 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT |||||||||||||||||||||||||||||||||||||||||||||||||| 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT 400 . : . : . : . : . : 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG |||||||||||||||||||||||||||||||||||||||||||||||||| 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG 450 . : . : . : . : . : 446 CAGTAAGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCG || ||| |||||| || ||||||||||||||| ||||||||||||||| 446 CATTAACCTAATACGTTAGTGTTTTGACGTTACCGACAGAATAAGCACCG 500 . : . : . 496 GCTAACTTCGTGCCAGCAGCCGCGGTA ||||||| |||||||||||||||||| 496 GCTAACTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS_A Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4305 Match Percentage : 92% Number of Matches : 486 Number of Mismatches : 31 Total Length of Gaps : 10 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTC AGCGG ||||||||||||||| || | |||||||| ||-----|-----||||| 51 ATGCAAGTCGAGCGGTAGAGAGAAGCTTGCTTCT CTTGAGAGCGG 100 . : . : . : . : . : 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT |||||||||||||||||||||||||||||||||||||||||||||||||| 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT 150 . : . : . : . : . : 146 CCGGAAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGA ||||||||| ||||||||||||||||||||| ||||||||| ||||| 146 TCGGAAACGGACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGA 200 . : . : . : . : . : 196 TCTTCGGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG |||||| ||| ||||||||||||||||||||||||||||||||||||| 196 CCTTCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG 250 . : . : . : . : . : 246 TGGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG || ||||| ||| |||||||||||||||||||||||||||||||||||| 246 TGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG 300 . : . : . : . : . : 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC |||||||||||||||||||||||||||||||||||||||||||||||||| 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC 350 . : . : . : . : . : 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT |||||||||||||||||||||||||||||||||||||||||||||||||| 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT 400 . : . : . : . : . : 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG |||||||||||||||||||||||||||||||||||||||||||||||||| 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG 450 . : . : . : . : . : 446 CAGTAAGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCG ||| ||||||| ||| ||||||||||||| ||||||||||||||| 446 TTGTAGATTAATACTCTGCAATTTTGACGTTACCGACAGAATAAGCACCG 500 . : . : . 496 GCTAACTTCGTGCCAGCAGCCGCGGTA ||||||| |||||||||||||||||| 496 GCTAACTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS_B Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4305 Match Percentage : 92% Number of Matches : 486 Number of Mismatches : 31 Total Length of Gaps : 10 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTC AGCGG ||||||||||||||| || | |||||||| ||-----|-----||||| 51 ATGCAAGTCGAGCGGTAGAGAGAAGCTTGCTTCT CTTGAGAGCGG 100 . : . : . : . : . : 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT |||||||||||||||||||||||||||||||||||||||||||||||||| 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT 150 . : . : . : . : . : 146 CCGGAAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGA ||||||||| ||||||||||||||||||||| ||||||||| ||||| 146 TCGGAAACGGACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGA 200 . : . : . : . : . : 196 TCTTCGGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG |||||| ||| ||||||||||||||||||||||||||||||||||||| 196 CCTTCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG 250 . : . : . : . : . : 246 TGGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG || ||||| ||| |||||||||||||||||||||||||||||||||||| 246 TGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG 300 . : . : . : . : . : 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC |||||||||||||||||||||||||||||||||||||||||||||||||| 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC 350 . : . : . : . : . : 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT |||||||||||||||||||||||||||||||||||||||||||||||||| 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT 400 . : . : . : . : . : 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG |||||||||||||||||||||||||||||||||||||||||||||||| | 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGAG 450 . : . : . : . : . : 446 CAGTAAGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCG |||| | |||||| | ||||||||||||||| ||||||||||||||| 446 CAGTTACCTAATACGTGATTGTTTTGACGTTACCGACAGAATAAGCACCG 500 . : . : . 496 GCTAACTTCGTGCCAGCAGCCGCGGTA ||||||| |||||||||||||||||| 496 GCTAACTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS_C Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4480 Match Percentage : 93% Number of Matches : 493 Number of Mismatches : 24 Total Length of Gaps : 10 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTC AGCGG ||||||||||||||| || | |||||||| ||-----|-----||||| 51 ATGCAAGTCGAGCGGTAGAGAGAAGCTTGCTTCT CTTGAGAGCGG 100 . : . : . : . : . : 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT |||||||||||||||||||||||||||||||||||||||||||||||||| 96 CGGACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGT 150 . : . : . : . : . : 146 CCGGAAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGA ||||||||| ||||||||||||||||||||| ||||||||| ||||| 146 TCGGAAACGGACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGA 200 . : . : . : . : . : 196 TCTTCGGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG |||||| ||| ||||||||||||||||||||||||||||||||||||| 196 CCTTCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGG 250 . : . : . : . : . : 246 TGGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG |||||||| ||| |||||||||||||||||||||||||||||||||||| 246 TGGGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATG 300 . : . : . : . : . : 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC |||||||||||||||||||||||||||||||||||||||||||||||||| 296 ATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGC 350 . : . : . : . : . : 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT |||||||||||||||||||||||||||||||||||||||||||||||||| 346 AGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGT 400 . : . : . : . : . : 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG |||||||||||||||||||||||||||||||||||||||||||||||||| 396 GTGTGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGG 450 . : . : . : . : . : 446 CAGTAAGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCG |||||| ||||||| ||||||||||||||||||| ||||||||||||||| 446 CAGTAAATTAATACTTTGCTGTTTTGACGTTACCGACAGAATAAGCACCG 500 . : . : . 496 GCTAACTTCGTGCCAGCAGCCGCGGTA ||||||| |||||||||||||||||| 496 GCTAACTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS_F Length: 524 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4279 Match Percentage : 92% Number of Matches : 487 Number of Mismatches : 35 Total Length of Gaps : 2 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAA GGGAGCTTGCTCCTGGATTC AGCGGCGG ||||||||||||||| | |-||| |||| ||||| |-|||||||| 51 ATGCAAGTCGAGCGGCAGCACGGGTACTTGTACCTGGTGGCGAGCGGCGG 100 . : . : . : . : . : 99 ACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGTCCG |||||||||||||||||||||||||||||||||||||||||||||| || 101 ACGGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGCTCG 150 . : . : . : . : . : 149 GAAACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGATCT ||||||| ||||||||||||||||||||| ||||||||| ||||| || 151 GAAACGGACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGACCT 200 . : . : . : . : . : 199 TCGGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGG |||| ||| ||||||||||||||||||||||||||||||||||||||| 201 TCGGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGA 250 . : . : . : . : . : 249 GGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATC ||||| ||| ||||||||||||||||||||||||||||||||||||||| 251 GGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATC 300 . : . : . : . : . : 299 AGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT |||||||||||||||||||||||||||||||||||||||||||||||||| 301 AGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 350 . : . : . : . : . : 349 GGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTG |||||||||||||||||||||||||||||||||||||||||||||||||| 351 GGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTG 400 . : . : . : . : . : 399 TGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAG |||||||||||||||||||||||||||||||||||||||||||||||||| 401 TGAAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAG 450 . : . : . : . : . : 449 TAAGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCGGCT | | |||||| | ||||||||||||||| |||||||||||||||||| 451 TTACCTAATACGTAWYTGTTTTGACGTTACCGACAGAATAAGCACCGGCT 500 . : . : 499 AACTTCGTGCCAGCAGCCGCGGTA |||| |||||||||||||||||| 501 AACTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_FLUORESCENS_G Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4445 Match Percentage : 94% Number of Matches : 491 Number of Mismatches : 31 Total Length of Gaps : 0 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTCAGCGGCGGAC ||||||||||||||||||| |||||||||||||| |||||||||||||| 51 ATGCAAGTCGAGCGGATGACAGGAGCTTGCTCCTGAATTCAGCGGCGGAC 100 . : . : . : . : . : 101 GGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGTCCGGA ||||||||||||||||||||||||||||||||||||||| ||||| || 101 GGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGACAACGTTTCGA 150 . : . : . : . : . : 151 AACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGATCTTC || | ||||||||||||||||||||| ||||||||| ||||| |||| 151 AAGGAACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGACCTTC 200 . : . : . : . : . : 201 GGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGGGG || ||| ||||||||||||||||||||||||||||||||||||||| || 201 GGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGAGG 250 . : . : . : . : . : 251 TAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG ||| ||| ||||||||||||||||||||||||||||||||||||||||| 251 TAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG 300 . : . : . : . : . : 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG |||||||||||||||||||||||||||||||||||||||||||||||||| 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG 350 . : . : . : . : . : 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG |||||||||||||||||||||||||||||||||||||||||||||||||| 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG 400 . : . : . : . : . : 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTA ||||||||||||||||||||||||||||||||||||||||||||||| || 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCATTA 450 . : . : . : . : . : 451 AGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCGGCTAA | |||||| || ||||||||||||||| |||||||||||||||||||| 451 ACCTAATACGTTAGTGTTTTGACGTTACCGACAGAATAAGCACCGGCTAA 500 . : . : 501 CTTCGTGCCAGCAGCCGCGGTA || |||||||||||||||||| 501 CTCTGTGCCAGCAGCCGCGGTA Alignment performed with GAP program at Michigan Tech. Univ. Max Match Min Mismatch Gap-Open Penalty Gap-Extension Penalty 10 -15 30 3 Upper Sequence: PSEUDOMONAS_AERUGINOSA Length: 522 Lower Sequence: PSEUDOMONAS_PUTIDA Length: 522 Best Alignment with Constant Cost for Long Insertions Similarity Score : 4395 Match Percentage : 93% Number of Matches : 489 Number of Mismatches : 33 Total Length of Gaps : 0 Note that terminal gaps are not penalized 0 . : . : . : . : . : 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC |||||||||||||||||||||||||||||||||||||||||||||||||| 1 TGGAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACAC 50 . : . : . : . : . : 51 ATGCAAGTCGAGCGGATGAAGGGAGCTTGCTCCTGGATTCAGCGGCGGAC ||||||||||||||||||| |||||||||| | ||||||||||||||| 51 ATGCAAGTCGAGCGGATGAGAAGAGCTTGCTCTTCGATTCAGCGGCGGAC 100 . : . : . : . : . : 101 GGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGATAACGTCCGGA ||||||||||||||||||||||||||||||||||||||| ||||| || 101 GGGTGAGTAATGCCTAGGAATCTGCCTGGTAGTGGGGGACAACGTTTCGA 150 . : . : . : . : . : 151 AACGGGCGCTAATACCGCATACGTCCTGAGGGAGAAAGTGGGGGATCTTC || | ||||||||||||||||||||| ||||||||| ||||| |||| 151 AAGGAACGCTAATACCGCATACGTCCTACGGGAGAAAGCAGGGGACCTTC 200 . : . : . : . : . : 201 GGACCTCACGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGGGG || ||| ||||||||||||||||||||||||||||||||||||||| || 201 GGGCCTTGCGCTATCAGATGAGCCTAGGTCGGATTAGCTAGTTGGTGAGG 250 . : . : . : . : . : 251 TAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG ||| ||| ||||||||||||||||||||||||||||||||||||||||| 251 TAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTGAGAGGATGATCAG 300 . : . : . : . : . : 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG |||||||||||||||||||||||||||||||||||||||||||||||||| 301 TCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG 350 . : . : . : . : . : 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG |||||||||||||||||||||||||||||||||||||||||||||||||| 351 GGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTG 400 . : . : . : . : . : 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTA ||||||||||||||||||||||||||||||||||||||||||||||| || 401 AAGAAGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCATTA 450 . : . : . : . : . : 451 AGTTAATACCTTGCTGTTTTGACGTTACCAACAGAATAAGCACCGGCTAA | |||||| || ||||||||||||||| |||||||||||||||||||| 451 ACCTAATACGTTAGTGTTTTGACGTTACCGACAGAATAAGCACCGGCTAA 500 . : . : 501 CTTCGTGCCAGCAGCCGCGGTA || |||||||||||||||||| 501 CTCTGTGCCAGCAGCCGCGGTA