Papers & Publications

Bioinformatics & Simulations

• Robel Kahsay, Guang Gao, and Li Liao, "An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes", accepted by Bioinformatics.

• Robel Kahsay, Guoli Wang, Guang Gao, Li Liao and Roland Dunbrack, "Quasi-consensus based comparison of profile hidden Markov models for protein sequences", accepted in Bioinformatics.

• Kishore Narra and Li Liao, "Use of extended phylogenetic profiles with E-values and support vector machines for protein family classification", to appear in The International Journal of Computer and Information Scie nces (2005).

• Robel Kahsay, Li Liao, and Guang Gao, "An improved hidden Markov model for transmembrane topology prediction", The Proceedings of The 16th IEEE International Conference on Tools with Artificial Intelligence, pp. 634-639, November 2004, Boca Raton, Florida.

• Kishore Narra and Li Liao, "Using extended phylogenetic profiles and support vector machines for protein family classification", The Proceedings of the Fifth International Conference on Software Engineering, Artificial Intelligence, Networking, and Parallel/Distributed Computing (SNPD04), pp. 152-157, Beijing, China.

• Li Liao and William Stafford Noble, "Combining Pairwise Sequence Similiarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships", Journal of Computational Biology, 10(2003)857-868.

• Li Liao, Sun Kim, and Jean-Francois Tomb, "Genome Comparisons Based on Profiles of Metabolic Pathways", The Proceedings of The Sixth International Conference on Knowledge-Based Intelligent Information & Engineering Systems (KES2002), pp469-476, September 2002, Crema, Italy.

• Sen Zhang, Li Liao, Jean-Francois Tomb, Jason T. L. Wang, "Clustering and Classifying Enzymes in Metabolic Pathways: Some Preliminary Results", ACM SIGKDD Workshop on Data Mining in Bioinformatics (BioKDD2002), pp19-24, Edmonton, Canada, July 2002.

• Li Liao, William Stafford Noble, "Combining pairwise sequence similarity and support vector machines for remote protein homology detection", The Proceedings of The Sixth International Conference on Research in Computational Molecular Biology (RECOMB 2002), April 2002, pp225-232. (http://www.erpland.org/recomb/papers.html).

• Derek W. Wood et al, "The Genome of Agrobacterium tumefaciens C58: Insights into the evolution and biology of a natural genetic engineer", Science 294(2001)2317-2323.

• Sun Kim, Li Liao, Jean-Francois Tomb, "A Probabilistic Approach to Sequence Assembly Validation", ACM SIGKDD Workshop on Data Mining in Bioinformatics (BioKDD2001), San Francisco, California, August 2001, pp38-43.

• Li Liao, Sun Kim, and Jean-Francois Tomb, "Whole Genome Comparisons by Metabolic Pathway Profiling", Abstract, The 9th International Conference on Intelligent Systems for Molecular Biology, Copenhagen, Denmark, July, 2001. (http://ismb01.cbs.dtu.dk/Evolution.html#A228)

• Rick W. Ye, Wang Tao, Laura Bedzyk, Thomas Young, Mario Chen, and Li Liao, "Global Gene Expression Profiles of Bacillus subtilis Grown under Anaerobic Conditions", Journal of Bacteriology, 182(2000)4458.

• Sun Kim, Li Liao, Michael Perry, Shiping Zhang, and Jean-Francois Tomb, "A Computational Approach to Sequence Assembly Validation", Poster The 8th International Conference on Intelligent System for Molecular Biology, San Diego, California, August, 2000.

• Li Liao, Sun Kim, and Jean-Francois Tomb, "Clustering Protein Sequences using Linkage Graph", Poster, The 8th International Conference on Intelligent System for Molecular Biology, San Diego, California, August, 2000.

• P. Zhang, X. Ye, L. Liao, J. Russo and S. Fischer, "Integrated Mapping Package--A Physical Mapping Software Tool Kit", Genomics 55(1999)78.

• X. Ye, S. Fischer, A. Rzhetsky, L. Liao, J. Russo and P. Zhang, "GHT (gene hunting tools)--A Comprehensive Software Package for Gene Discovery", Abstract, Genome Mapping, Sequencing & Biology, Cold Spring Harbor Laboratory, May 1998.

• Li Liao & Gregory A. Voth, "Computer simulation of lithium impurities in liquid para-hydrogen", presented at The American Conference on Theoretical Chemistry, Park City, Utah, 1996.

  Theoretical Physics

• Li Liao & Xing-Chang Song, "Irreducible Representation of Quantum sl(3) Enveloping Algebra", Commun. Theor. Phys. 13(1990)209-216.

• Xue-Qian Li, Q.R. Wen, and Li Liao, "A phenomenological approach to Omega- radiative decay". Commun. Theor. Phys. 13(1990)91.

• Li Liao & Xing-Chang Song, "Quantum Lie Superalgebras and Non-Standard Braid Group Representations", Modern Physics Letters A6(1991)959-968.

• Li Liao & Xing-Chang Song, "q-Oscillators and Quantum Lie Superalgebras", Commun. Theor. Phys. 16(1991)249-256.

• Li Liao & Xing-Chang Song, "q-Deformation of Lie Superalgebra B(m,n), B(0,n), C(1+n) and D(m,n) in Their Boson-Fermion Representation", Journal of Physics, A24(1991)5451-5463.

• Li Liao & Xing-Chang Song, "Spinor and Oscillator Representations of Quantum Enveloping Algebras of Type B_n, C_n and D_n", Commun. Theor. Phys. 17(1992)439.

• Xing-Chang Song & Li Liao, "New Type Covariant Differential Calculus On the Quantum Planes", Commun. Theor. Phys. 17(1992)323.

• Xing-Chang Song & Li Liao, "Quantum Schrodinger Equation and q-Deformation of Hydrogen Atom" , Journal of Physics A25(1992)623.

• Li Liao & Xing-Chang Song, "A Real Structure of q-Euclidean Space", Int. J. Mod. Phys A (Proc. Suppl.) 3A(1993)471.

• Li Liao & Xing-Chang Song, "A Real Structure of q-Euclidean Space and Differential Calculus", Science in China, A23(1993)606.

• Xing-Chang Song & Li Liao, "Canonical Differential Calculus on Quantum Orthogonal Groups", Preprint CCAST-93-02, 1993, Beijing.

• Li Liao & Xing-Chang Song, "On q-Differential Representation of Quantum Lie Superalgebras", ICTP Preprint, IC/94/7, Trieste, Italy.

• Xing-Chang Song & Li Liao, "More about the q-deformed H-atom wave functions", ICTP Preprint, IC/94/8, Trieste, Italy.

• Li Liao, "Canonical Transformations of q-Bosonic Oscillators", Commun Theor. Phys., 24(1995)121

• Liu Y., X.Q. Li, L. Liao, and J.F., Lu, "q-deformed SU_q(2), quark mixing and the Cabibbo-Kabayashi-Maskawa matrix", Commun Theor. Phys., 27(1997)469

  Book

• Yibing Din, Li Liao, and Deming Ren, "Path to Unification, Research on Several Frontier Topics of Theoretical Physics in The 1990's", ISBN 7-5357-2129-X, Hunan Science and Technology Press, 1995.