Computer and Information Sciences
University of Delaware
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| AUTHOR: |
Li Jin and Karl V. Steiner and Carl J. Schmidt and Gang Situ and Sachin Kamboj and Kay T. Hlaing and Morgan Conner and Heebal Kim and Marlene Emara and Keith S. Decker
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| TITLE: |
A Multiagent Framework to Integrate and Visualize Gene Expression Information
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| ABSTRACT: |
With rapidly growing amounts of genomic and expression
data publicly available, efficient and automated
analysis tools are increasingly important for
biologists to derive knowledge for a large variety
of organisms. Multiagent information gathering
methods can be used to retrieve and integrate
genomic and expression information from available
databases or web sources to generate knowledge
databases for organisms of interest. We present a
novel, flexible and generalizable bioinformatics
multiagent system, called BioMAS, which in this
paper is used to gather and annotate genomic data
from various databases and web sources and analyze
the expression of gene products for a given
organism. In this paper, we also present a new
approach to visualize complex datasets representing
gene expression and pathway models in hierarchical
view space using the Starlight information
visualization system (Starlight). This approach is
an innovative application of using Starlight in the
field of comparative genomics.
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| KEYWORDS: |
gene, expression information, visualization, Starlight
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| PUBLICATION: |
Multiagent Data Warehousing (MADW) and Multiagent Data Mining (MADM)
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| DATE: |
November, 2005
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| SOURCES: |
PDF: http://www.cis.udel.edu/~kamboj/pubs/kamboj.madw.05.pdf
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| PAGES: |
1 -- 7
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| BIBTEX: |
@article{kamboj.madw.05, Author = {Li Jin and Karl V. Steiner and Carl J. Schmidt and Gang Situ and Sachin Kamboj and Kay T. Hlaing and Morgan Conner and Heebal Kim and Marlene Emara and Keith S. Decker}, Title = {A Multiagent Framework to Integrate and Visualize Gene Expression Information}, Month = {November}, Year = {2005}, Keywords = {gene, expression information, visualization, Starlight}, Pages = {1 -- 7}, Journal = {Multiagent Data Warehousing (MADW) and Multiagent Data Mining (MADM)}, } |
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